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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193033728_193034539_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
193033728 - 193034539
Intron Length:
812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TTTTGCTGCATT
Flanking Amino Acid:
CSTCLKMIVNAGVNRISYWP
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
72.7
38.8
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
40.2
-1.1
2.9
52.9
44.1
Minor BPS
50.4
0.09
2.3
80.5
41.8

Associated Gene:

Gene:
CDADC1
Ensembl Gene ID:
ENSAPLG00000009321
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009718
193028329 - 193037436
9108