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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193034718_193036247_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
193034718 - 193036247
Intron Length:
1530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTTAATTGG
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATAATAATAATA
Flanking Amino Acid:
KSQVKMSRLTVKKSGLVVVK
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51
0.03
1.3
48.4
42.6
Major BPS
80
0.75
1
78.6
31
Major PPT
91.9
0.94
0.5
89.3
19.5
Minor 5ss
38.2
-1.3
2.9
51.6
45
Minor BPS
46
-0.3
1.8
57.6
35

Associated Gene:

Gene:
CDADC1
Ensembl Gene ID:
ENSAPLG00000009321
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009718
193028329 - 193037436
9108