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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193049892_193051845_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
193049892 - 193051845
Intron Length:
1954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
CGCTCCTTAACT
Flanking Amino Acid:
RGHRQTVKILAVVILAFIIC
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
85.8
0.81
0.7
81.6
30.5
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
80.3
1.04
1.2
84.57
42.1

Associated Gene:

Gene:
MLNR
Ensembl Gene ID:
ENSAPLG00000024039
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038382
193049593 - 193054461
4869