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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193062005_193063980_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
193062005 - 193063980
Intron Length:
1976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGAATACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTCTCTTTGAAT
Flanking Amino Acid:
IDGLQPDTTYRIRIQALNSL
Intron Amino Acid Position:
903

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
64.5
0.33
1
57
42.4
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
71
0.74
1.4
83.94
37.1

Associated Gene:

Gene:
FNDC3A
Ensembl Gene ID:
ENSAPLG00000009605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034178
193054486 - 193106907
52422
ENSAPLT00000026630
193055024 - 193165930
110907
ENSAPLT00000010156
193054486 - 193137065
82580