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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193068229_193068315_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
193068229 - 193068315
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAATTCAA
5'SS Class:
major
3'SS Sequence:
TTCTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTCTTATTT
Flanking Amino Acid:
PRAREIQLRWGPPQVDGGSP
Intron Amino Acid Position:
662

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
67
40.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.1
0.81
0.7
85.4
28.1
Minor 5ss
33.2
-1.9
2.8
33
41.9
Minor BPS
69.5
0.69
1.5
82.89
39.2

Associated Gene:

Gene:
FNDC3A
Ensembl Gene ID:
ENSAPLG00000009605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026630
193055024 - 193165930
110907
ENSAPLT00000010156
193054486 - 193137065
82580
ENSAPLT00000034178
193054486 - 193106907
52422