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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193076356_193076961_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
193076356 - 193076961
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TTTAATTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TCCTGTTTAATT
Flanking Amino Acid:
YILEMEDENSGYGFKPKYDG
Intron Amino Acid Position:
489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
71.7
34.4
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
83.4
0.75
0.8
77.7
36.2
Minor 5ss
42.7
-0.8
2.7
56.3
41.9
Minor BPS
61.7
0.44
1.8
74.65
43.4

Associated Gene:

Gene:
FNDC3A
Ensembl Gene ID:
ENSAPLG00000009605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010156
193054486 - 193137065
82580
ENSAPLT00000034178
193054486 - 193106907
52422
ENSAPLT00000026630
193055024 - 193165930
110907