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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193077137_193081023_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
193077137 - 193081023
Intron Length:
3887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACATACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTGTTTTTACAT
Flanking Amino Acid:
RLAAKNDMGMSGFSEEVLYH
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
83.4
0.75
0.9
78.2
34.4
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
51
0.11
1.7
67.73
43.8

Associated Gene:

Gene:
FNDC3A
Ensembl Gene ID:
ENSAPLG00000009605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034178
193054486 - 193106907
52422
ENSAPLT00000026630
193055024 - 193165930
110907
ENSAPLT00000010156
193054486 - 193137065
82580