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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193081149_193081765_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
193081149 - 193081765
Intron Length:
617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCAAG
5'SS Class:
major
3'SS Sequence:
TATTCCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATGTGATTAATT
Flanking Amino Acid:
IHSYLLEWDEGKGNGEFCQC
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
71.6
40.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.5
0.75
0.7
81.8
29.7
Minor 5ss
40.4
-1.1
2.9
49
41.4
Minor BPS
55.6
0.25
2
75.36
41.7

Associated Gene:

Gene:
FNDC3A
Ensembl Gene ID:
ENSAPLG00000009605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034178
193054486 - 193106907
52422
ENSAPLT00000026630
193055024 - 193165930
110907
ENSAPLT00000010156
193054486 - 193137065
82580