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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193084786_193086044_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
193084786 - 193086044
Intron Length:
1259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAGGTGTT
5'SS Class:
major
3'SS Sequence:
TATCTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATAACTTTAACA
Flanking Amino Acid:
GKDGKYKTVYIGEENKVTVN
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
78.2
36.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85.5
0.8
0.8
77.2
36.6
Minor 5ss
39.7
-1.2
3.7
61.7
43.4
Minor BPS
73
0.72
1.2
75.67
35

Associated Gene:

Gene:
FNDC3A
Ensembl Gene ID:
ENSAPLG00000009605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026630
193055024 - 193165930
110907
ENSAPLT00000010156
193054486 - 193137065
82580
ENSAPLT00000034178
193054486 - 193106907
52422