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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193094660_193097235_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
193094660 - 193097235
Intron Length:
2576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TACTTTCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTTTTTACTT
Flanking Amino Acid:
YHTSQMYGDLDTLPAHGRAN
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.5
0.57
0.9
74.5
35.1
Minor 5ss
37
-1.5
2.8
43.2
43.8
Minor BPS
63.8
0.51
1.6
78.3
39.3

Associated Gene:

Gene:
FNDC3A
Ensembl Gene ID:
ENSAPLG00000009605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010156
193054486 - 193137065
82580
ENSAPLT00000034178
193054486 - 193106907
52422
ENSAPLT00000026630
193055024 - 193165930
110907