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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193101781_193127232_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
193101781 - 193127232
Intron Length:
25452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGG
5'SS Class:
major
3'SS Sequence:
TTAACCCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTTTTTAACC
Flanking Amino Acid:
REDGQFQCITGPAQVPMMSP
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
66.7
0.38
0.9
63.9
38
Minor 5ss
36.7
-1.5
3.1
47.6
47.9
Minor BPS
81.3
0.96
1
84.09
27.8

Associated Gene:

Gene:
FNDC3A
Ensembl Gene ID:
ENSAPLG00000009605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010156
193054486 - 193137065
82580
ENSAPLT00000026630
193055024 - 193165930
110907