Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193127309_193165924_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

193127309 - 193165924

Intron Length:

38616

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

TTTTATTTTTAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

GCTCTTTTATTT

Flanking Amino Acid:

MAVILVQVNPGE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

82.3

0.73

87.2

30.4

Minor 5ss

28.1

-2.5

3.1

35.3

41.4

Minor BPS

50.8

0.1

1.5

65.03

40.3

Associated Gene:

Gene:

FNDC3A

Ensembl Gene ID:

ENSAPLG00000009605

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026630

193055024 - 193165930

110907