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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193220306_193227697_F

Intron Information:

Intron Rank:
140824
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
193220306 - 193227697
Intron Length:
7392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTTTTTCTT
5'SS Class:
weak_major
3'SS Sequence:
TAGTACTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAC
U12 Branch Point Sequence:
TGCACTTTGAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.5
0.11
1.3
61.4
42.6
Major BPS
65.1
0.38
1.4
77.4
37.4
Major PPT
72.6
0.51
0.9
66.5
40
Minor 5ss
45.1
-0.5
2.8
65
39.1
Minor BPS
52.7
0.17
1.7
68.19
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025839
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023336
193219907 - 193228434
8528