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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193311536_193317039_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
193311536 - 193317039
Intron Length:
5504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAACAAT
5'SS Class:
major
3'SS Sequence:
TCTCTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTGATTTTAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
73
37.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
85.8
0.81
0.7
80.7
24.4
Minor 5ss
40.5
-1.1
3.1
53.9
44.6
Minor BPS
63.3
0.4
1.3
65.92
40.3

Associated Gene:

Gene:
RCBTB2
Ensembl Gene ID:
ENSAPLG00000007415
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033210
193311018 - 193335316
24299
ENSAPLT00000031950
193311018 - 193336921
25904