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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193317104_193319956_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
193317104 - 193319956
Intron Length:
2853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAGTG
5'SS Class:
major
3'SS Sequence:
TCTTTAACATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTTTCTTTAACA
Flanking Amino Acid:
TPPSQEVSAKVLEATLLSAL
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.3
69.9
41.1
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
73.7
0.53
0.9
72.4
36.6
Minor 5ss
29.5
-2.4
3.3
38.5
46.5
Minor BPS
92.1
1.32
0.7
95.26
19.9

Associated Gene:

Gene:
RCBTB2
Ensembl Gene ID:
ENSAPLG00000007415
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031950
193311018 - 193336921
25904
ENSAPLT00000021966
193311018 - 193336921
25904
ENSAPLT00000007728
193313720 - 193336921
23202
ENSAPLT00000033210
193311018 - 193335316
24299