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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193320116_193320557_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
193320116 - 193320557
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TCTTTTATAACA
Flanking Amino Acid:
EVLYATENDEVFVLGMNCSG
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
87.2
27.3
Major BPS
84.6
0.86
1
74
41.2
Major PPT
81.2
0.7
0.9
77.9
33.9
Minor 5ss
38.7
-1.3
3.4
58.4
46.2
Minor BPS
65.3
0.48
1.6
75.35
36.3

Associated Gene:

Gene:
RCBTB2
Ensembl Gene ID:
ENSAPLG00000007415
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021966
193311018 - 193336921
25904
ENSAPLT00000007728
193313720 - 193336921
23202
ENSAPLT00000033210
193311018 - 193335316
24299
ENSAPLT00000031950
193311018 - 193336921
25904