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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_19332031_19333910_R

Intron Information:

Intron Rank:
147492
Intron Class:
major
Intron Phase:
Intron Coordinates:
19332031 - 19333910
Intron Length:
1880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GATTTTTTAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.5
34.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81
0.7
0.8
72.6
37.6
Minor 5ss
34.3
-1.8
3
44.8
42.9
Minor BPS
61.5
0.34
1.6
67.52
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026696
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036023
19331869 - 19334256
2388