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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193322903_193323566_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
193322903 - 193323566
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCTTCTTTGATG
Flanking Amino Acid:
HSMVLTSDGEVYTWGYNNSG
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
78.6
0.71
1
78.6
31
Major PPT
78.9
0.65
0.9
75.6
33
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
70.4
0.5
1.3
69.68
38.6

Associated Gene:

Gene:
RCBTB2
Ensembl Gene ID:
ENSAPLG00000007415
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021966
193311018 - 193336921
25904
ENSAPLT00000007728
193313720 - 193336921
23202
ENSAPLT00000033210
193311018 - 193335316
24299
ENSAPLT00000031950
193311018 - 193336921
25904