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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193323726_193325249_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
193323726 - 193325249
Intron Length:
1524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
AACAACTGAAAT
Flanking Amino Acid:
CSMAVVENGEVYVWGYNGNG
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
82.1
0.72
1
86.9
31.1
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
46.6
-0.1
1.7
60.34
42

Associated Gene:

Gene:
RCBTB2
Ensembl Gene ID:
ENSAPLG00000007415
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031950
193311018 - 193336921
25904
ENSAPLT00000021966
193311018 - 193336921
25904
ENSAPLT00000007728
193313720 - 193336921
23202
ENSAPLT00000033210
193311018 - 193335316
24299