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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193325358_193325870_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
193325358 - 193325870
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTGTG
5'SS Class:
major
3'SS Sequence:
TTATTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTATTATTT
Flanking Amino Acid:
AALQGIRVQRVACGCAHTLV
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
67.1
44.6
Major BPS
100
1.24
0.5
100
0
Major PPT
89.3
0.88
0.7
84.4
30.3
Minor 5ss
34.5
-1.8
3.5
39.9
46.1
Minor BPS
58
0.33
1.8
79.06
37.3

Associated Gene:

Gene:
RCBTB2
Ensembl Gene ID:
ENSAPLG00000007415
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033210
193311018 - 193335316
24299
ENSAPLT00000031950
193311018 - 193336921
25904
ENSAPLT00000021966
193311018 - 193336921
25904
ENSAPLT00000007728
193313720 - 193336921
23202