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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193326014_193329555_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
193326014 - 193329555
Intron Length:
3542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACTT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTGAATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGAAT
U12 Branch Point Sequence:
TGCCTGTGAATT
Flanking Amino Acid:
YPATVVVNKDRIIEIAACHS
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
37.4
Major BPS
59.4
0.24
1.5
69.7
44.2
Major PPT
66.6
0.37
1
62.5
42.3
Minor 5ss
38
-1.4
3.3
57.1
47
Minor BPS
45.4
-0.2
2.1
62.39
42

Associated Gene:

Gene:
RCBTB2
Ensembl Gene ID:
ENSAPLG00000007415
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033210
193311018 - 193335316
24299
ENSAPLT00000031950
193311018 - 193336921
25904
ENSAPLT00000021966
193311018 - 193336921
25904
ENSAPLT00000007728
193313720 - 193336921
23202