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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193329747_193331834_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
193329747 - 193331834
Intron Length:
2088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCAAT
U12 Branch Point Sequence:
TCACTATCAATT
Flanking Amino Acid:
PAVMWRLLSVEPDDHLTVAQ
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.3
32.5
Major BPS
69.1
0.47
1.2
77
34.1
Major PPT
79.7
0.67
0.8
75.8
32.8
Minor 5ss
43
-0.8
3
58.3
46.6
Minor BPS
47.4
-0.1
1.7
63.48
40.7

Associated Gene:

Gene:
RCBTB2
Ensembl Gene ID:
ENSAPLG00000007415
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033210
193311018 - 193335316
24299
ENSAPLT00000031950
193311018 - 193336921
25904
ENSAPLT00000021966
193311018 - 193336921
25904
ENSAPLT00000007728
193313720 - 193336921
23202