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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193341546_193343179_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
193341546 - 193343179
Intron Length:
1634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGATTC
5'SS Class:
major
3'SS Sequence:
CCACTTTTCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTTAT
U12 Branch Point Sequence:
TATTTTTCCACT
Flanking Amino Acid:
DGNDTSASEENFASRTCVAL
Intron Amino Acid Position:
797

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
0.9
74.8
29.2
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
76.6
0.6
0.8
71.7
32.4
Minor 5ss
38.8
-1.3
3.2
51
39.9
Minor BPS
52.8
0.17
2
76.67
40.2

Associated Gene:

Gene:
RB1
Ensembl Gene ID:
ENSAPLG00000007734
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008091
193341268 - 193409846
68579