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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193392403_193392479_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
193392403 - 193392479
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTATGCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
AATTCCAGAAAG
Flanking Amino Acid:
YRVMESMLKSEEQRLSVHNF
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
84.5
29.1
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
78.3
0.64
0.9
74.7
39.7
Minor 5ss
44.3
-0.6
2.8
59
45.5
Minor BPS
49
-0.2
1.9
59.12
41.4

Associated Gene:

Gene:
RB1
Ensembl Gene ID:
ENSAPLG00000007734
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008091
193341268 - 193409846
68579