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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193392537_193393249_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
193392537 - 193393249
Intron Length:
713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTCTTTTAATA
Flanking Amino Acid:
GQGCAEIGSQRYILGVRLYY
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.1
75.8
34.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.2
0.66
0.8
76.9
30.3
Minor 5ss
38.5
-1.3
3.2
52
45.2
Minor BPS
68.4
0.57
1.2
71.66
34.9

Associated Gene:

Gene:
RB1
Ensembl Gene ID:
ENSAPLG00000007734
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008091
193341268 - 193409846
68579