Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193393367_193394066_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

193393367 - 193394066

Intron Length:

700

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TGTCCTCAACTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTCAA

U12 Branch Point Sequence:

CTGTCCTCAACT

Flanking Amino Acid:

PSDTLIAYFNNCTVNPKDSI

Intron Amino Acid Position:

272

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

79.7

28.2

Major BPS

73.1

0.58

73.8

32.3

Major PPT

62.7

0.29

56.5

Minor 5ss

34.4

-1.8

3.3

44.6

43.6

Minor BPS

72.8

0.79

1.6

84.2

42.6

Associated Gene:

Gene:

RB1

Ensembl Gene ID:

ENSAPLG00000007734

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039977

193343176 - 193413276

70101

ENSAPLT00000008091

193341268 - 193409846

68579