Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193400476_193403005_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

193400476 - 193403005

Intron Length:

2530

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATTGGA

5'SS Class:

strong_major

3'SS Sequence:

GTTTTTTTTCGAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

AACTTTTCAATG

Flanking Amino Acid:

GIVASNGLPEVEVLSKEYNE

Intron Amino Acid Position:

180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

74.3

36.3

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

69.6

0.44

1.7

76.9

42.1

Minor 5ss

32.1

-2

3.1

41.4

44.9

Minor BPS

49.2

-0.2

1.5

50.25

38.5

Associated Gene:

Gene:

RB1

Ensembl Gene ID:

ENSAPLG00000007734

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039977

193343176 - 193413276

70101

ENSAPLT00000008091

193341268 - 193409846

68579