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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193413168_193413215_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
193413168 - 193413215
Intron Length:
48

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCATGAG
5'SS Class:
major
3'SS Sequence:
CAGCCCCGAGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
GTTTGCTCAGCC
Flanking Amino Acid:
YKNGEGSRGQEQAEGRPHGG
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1
61.9
38.7
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
53.5
0.08
1
47.6
35
Minor 5ss
24.9
-2.9
3.2
30.6
43.3
Minor BPS
49
-0
2.2
67.68
43.6

Associated Gene:

Gene:
RB1
Ensembl Gene ID:
ENSAPLG00000007734
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039977
193343176 - 193413276
70101