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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193436471_193438503_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
193436471 - 193438503
Intron Length:
2033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTCTGCTTATTT
Flanking Amino Acid:
PADIVHDFHRRLTAYLDLSL
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
76.4
0.59
1
70
40.8
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
58.9
0.36
2
79.24
43.6

Associated Gene:

Gene:
ITM2B
Ensembl Gene ID:
ENSAPLG00000008210
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008537
193431506 - 193456695
25190