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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193484238_193484574_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
193484238 - 193484574
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
TCTTGTCTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTGTACAAAACT
Flanking Amino Acid:
KLPQPGEESQILELLIQRDG
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.3
39.5
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
73.7
0.53
0.9
70
35.3
Minor 5ss
42.6
-0.8
3
56.2
47.9
Minor BPS
51.2
0.12
2.1
77.98
43.9

Associated Gene:

Gene:
MED4
Ensembl Gene ID:
ENSAPLG00000008395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022484
193482399 - 193490829
8431
ENSAPLT00000008734
193482399 - 193490829
8431