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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193484746_193485116_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
193484746 - 193485116
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTACAACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTTTCCCTACAA
Flanking Amino Acid:
KQLKEAEHILATAVYQAKEK
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
59
0.2
0.9
52.5
36
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
57.6
0.23
2.1
77.61
38.8

Associated Gene:

Gene:
MED4
Ensembl Gene ID:
ENSAPLG00000008395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022484
193482399 - 193490829
8431
ENSAPLT00000008734
193482399 - 193490829
8431