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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193495225_193495434_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
193495225 - 193495434
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAGGG
5'SS Class:
major
3'SS Sequence:
CTTTTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
PRNSEPDKNEGWEWVKWDEF
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
56.8
42.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.1
0.95
0.6
87.6
22.7
Minor 5ss
23.9
-3
3
21
37.4
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
NUDT15
Ensembl Gene ID:
ENSAPLG00000021981
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029008
193494800 - 193496174
1375