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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193518681_193521375_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
193518681 - 193521375
Intron Length:
2695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AATTATTTATGC
Flanking Amino Acid:
FAITMERSFQGPVLIGSSQG
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.7
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.5
0.75
0.7
76.7
32
Minor 5ss
33.7
-1.9
2.8
42.7
38.3
Minor BPS
46.8
-0.2
2
58.72
40.2

Associated Gene:

Gene:
SUCLA2
Ensembl Gene ID:
ENSAPLG00000008417
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008802
193507542 - 193526217
18676