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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193522070_193522384_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
193522070 - 193522384
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATGTTT
5'SS Class:
major
3'SS Sequence:
TTTTTCCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTCTTTCTAACC
Flanking Amino Acid:
NPMVEDASGVVMCMDAKINF
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.1
36.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
91.5
0.93
0.6
89.8
18.5
Minor 5ss
42.9
-0.8
3.4
61.4
45.4
Minor BPS
63.3
0.4
1.6
74.1
37

Associated Gene:

Gene:
SUCLA2
Ensembl Gene ID:
ENSAPLG00000008417
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008802
193507542 - 193526217
18676