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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193523825_193524138_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
193523825 - 193524138
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTCAGTAAGA
Flanking Amino Acid:
LKIPIVVRLQGTRVDDAKAL
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.1
0.56
1
79.3
33.1
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
48.3
-0.1
2.4
69.72
42.3

Associated Gene:

Gene:
SUCLA2
Ensembl Gene ID:
ENSAPLG00000008417
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008802
193507542 - 193526217
18676