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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193524228_193525810_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
193524228 - 193525810
Intron Length:
1583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATGTTTTGAAAT
Flanking Amino Acid:
CDDLDEAAKMVVKLSEIVTL
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
67.8
37.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
96.8
1.05
0.5
96.1
13.2
Minor 5ss
29.9
-2.3
3.3
35.1
42.4
Minor BPS
56.5
0.28
1.5
71.99
38.9

Associated Gene:

Gene:
SUCLA2
Ensembl Gene ID:
ENSAPLG00000008417
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008802
193507542 - 193526217
18676