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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193551144_193551469_R

Intron Information:

Intron Rank:
146322
Intron Class:
major
Intron Phase:
Intron Coordinates:
193551144 - 193551469
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
TTCTTCTCAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAA
U12 Branch Point Sequence:
TTCTTCTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.3
39.5
Major BPS
60.4
0.26
1.3
65.6
41.4
Major PPT
80.9
0.69
0.8
77.5
29.8
Minor 5ss
42.6
-0.8
3
56.2
47.9
Minor BPS
71.3
0.66
1.5
79.1
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026079
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032448
193549244 - 193552326
3083