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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193803570_193807438_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
193803570 - 193807438
Intron Length:
3869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
CTGATGTCAACT
Flanking Amino Acid:
MPVSMLTILYGYTWPLPTKL
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
29
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
86.8
0.83
0.8
83.9
31.1
Minor 5ss
36.7
-1.5
3
52.2
44.4
Minor BPS
45.5
-0.2
2.2
64.08
46.3

Associated Gene:

Gene:
HTR2A
Ensembl Gene ID:
ENSAPLG00000011672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012142
193802495 - 193825539
23045