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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193807640_193824739_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
193807640 - 193824739
Intron Length:
17100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
AATCCACCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CTTTCTCTAATC
Flanking Amino Acid:
KIIVVWTISVGISMPVPVFG
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
69.5
0.44
0.9
64
37.2
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
64.9
0.45
1.7
74.53
36.7

Associated Gene:

Gene:
HTR2A
Ensembl Gene ID:
ENSAPLG00000011672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012142
193802495 - 193825539
23045