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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193837975_193839106_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
193837975 - 193839106
Intron Length:
1132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CTGTTCTTAACA
Flanking Amino Acid:
SAAGPQSSSETMALKQVSSN
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
77.2
0.61
0.9
73.2
36
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
77.8
0.87
1.2
78.47
38.6

Associated Gene:

Gene:
ESD
Ensembl Gene ID:
ENSAPLG00000014654
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015290
193837723 - 193847039
9317