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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193839178_193840114_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
193839178 - 193840114
Intron Length:
937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACACT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GTTTTATTGATA
Flanking Amino Acid:
EGFQKVFEHDSTELKCKMKF
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
77.8
36.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
78.3
0.64
1
73.1
41.2
Minor 5ss
41.4
-1
3
58.6
45.7
Minor BPS
60.6
0.33
1.6
71.66
33.9

Associated Gene:

Gene:
ESD
Ensembl Gene ID:
ENSAPLG00000014654
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015290
193837723 - 193847039
9317