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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193840204_193840386_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
193840204 - 193840386
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
ATGTAATGGACT
Flanking Amino Acid:
GKCPVLYWLSGLTCTEQNFI
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.6
90.5
20.4
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
87.3
0.84
0.6
81.2
30.9
Minor 5ss
36
-1.6
2.7
44.9
43.2
Minor BPS
47.3
-0.1
2
68.69
41.7

Associated Gene:

Gene:
ESD
Ensembl Gene ID:
ENSAPLG00000014654
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015290
193837723 - 193847039
9317