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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193840486_193842612_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
193840486 - 193842612
Intron Length:
2127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCATGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AACTATAGAACC
Flanking Amino Acid:
LIVVAPDTSPRGCNIEGEEE
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.2
87.9
29.3
Major BPS
100
1.24
0.5
100
0
Major PPT
74.7
0.56
1
71
39
Minor 5ss
47.5
-0.2
2.8
66.5
37.9
Minor BPS
44.5
-0.4
1.8
53.08
37.7

Associated Gene:

Gene:
ESD
Ensembl Gene ID:
ENSAPLG00000014654
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015290
193837723 - 193847039
9317