About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193842738_193843816_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
193842738 - 193843816
Intron Length:
1079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTCCTTTACA
Flanking Amino Acid:
YRMYSYVKDELPKLINANFP
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.1
0.88
0.6
83.6
24.8
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
77.4
0.86
1.5
83.52
37

Associated Gene:

Gene:
ESD
Ensembl Gene ID:
ENSAPLG00000014654
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015290
193837723 - 193847039
9317