About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193843937_193844454_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
193843937 - 193844454
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TCTTTCTCAACA
Flanking Amino Acid:
LALKNPGKYKSVSAFAPICN
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
80.5
27.4
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
81.1
0.7
0.8
77.6
29.8
Minor 5ss
41.3
-1
3.1
56.6
42
Minor BPS
71.9
0.68
1.5
79.1
37.4

Associated Gene:

Gene:
ESD
Ensembl Gene ID:
ENSAPLG00000014654
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015290
193837723 - 193847039
9317