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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193851662_193861112_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
193851662 - 193861112
Intron Length:
9451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTAAT
5'SS Class:
major
3'SS Sequence:
TGTCTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
ATAACCTAATCT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
80
34.7
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
83.9
0.76
0.8
77.1
37.1
Minor 5ss
36.4
-1.5
3
51.3
45.2
Minor BPS
51.3
0.12
2
72.23
44.2

Associated Gene:

Gene:
LRCH1
Ensembl Gene ID:
ENSAPLG00000014780
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039134
193851611 - 193967070
115460
ENSAPLT00000032824
193851611 - 193967070
115460
ENSAPLT00000020199
193851611 - 193967070
115460
ENSAPLT00000018395
193851611 - 193967070
115460