About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193884245_193885483_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
193884245 - 193885483
Intron Length:
1239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTGAATTACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTCTTGAATT
Flanking Amino Acid:
NTSGQTSHNENKDKSPTMSP
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
67.6
0.4
1
61.5
43.4
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
73
0.8
1.3
85.63
34.4

Associated Gene:

Gene:
LRCH1
Ensembl Gene ID:
ENSAPLG00000014780
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020199
193851611 - 193967070
115460
ENSAPLT00000018395
193851611 - 193967070
115460
ENSAPLT00000043844
193849492 - 193967070
117579
ENSAPLT00000015482
193849492 - 193967070
117579
ENSAPLT00000039134
193851611 - 193967070
115460
ENSAPLT00000032824
193851611 - 193967070
115460