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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193887493_193887607_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
193887493 - 193887607
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGTGTTTA
5'SS Class:
major
3'SS Sequence:
TCTTTATACATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTATCTTTATAC
Flanking Amino Acid:
TALEFQESTVNGQMQMEMSS
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
0.9
75.6
29.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
73.6
0.53
0.9
69.7
34.7
Minor 5ss
46.1
-0.4
2.7
57.4
41.7
Minor BPS
61.9
0.35
1.7
72.49
38.4

Associated Gene:

Gene:
LRCH1
Ensembl Gene ID:
ENSAPLG00000014780
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039134
193851611 - 193967070
115460
ENSAPLT00000032824
193851611 - 193967070
115460
ENSAPLT00000020199
193851611 - 193967070
115460
ENSAPLT00000015482
193849492 - 193967070
117579