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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193890476_193891494_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
193890476 - 193891494
Intron Length:
1019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTATTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTATTATA
Flanking Amino Acid:
EEDAQWQTEEIINLSEEQTI
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
85.8
0.81
0.7
81.5
28.9
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
57.8
0.24
1.9
75.93
35

Associated Gene:

Gene:
LRCH1
Ensembl Gene ID:
ENSAPLG00000014780
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039134
193851611 - 193967070
115460
ENSAPLT00000032824
193851611 - 193967070
115460
ENSAPLT00000018395
193851611 - 193967070
115460
ENSAPLT00000015482
193849492 - 193967070
117579