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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193891563_193893255_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
193891563 - 193893255
Intron Length:
1693

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGCGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CAGTTCTTAATC
Flanking Amino Acid:
LTTEFMSYIKSRAAECDELL
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.8
1.13
0.8
81.8
38.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
71.5
0.48
1
64.8
41.4
Minor 5ss
33.5
-1.9
4
48.7
47.5
Minor BPS
68.2
0.55
1.3
66.57
39.7

Associated Gene:

Gene:
LRCH1
Ensembl Gene ID:
ENSAPLG00000014780
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032824
193851611 - 193967070
115460
ENSAPLT00000020199
193851611 - 193967070
115460
ENSAPLT00000018395
193851611 - 193967070
115460
ENSAPLT00000043844
193849492 - 193967070
117579
ENSAPLT00000015482
193849492 - 193967070
117579
ENSAPLT00000039134
193851611 - 193967070
115460